PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G18328.1
Common NameATRL4, RL4, T30D6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 77aa    MW: 8983 Da    PI: 9.6021
Description RAD-like 4
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G18328.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.2e-12956247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +WT+ Ed+++  a +++ ++   +W +Iar +g g++ +++k ++  +
      AT2G18328.1  9 SSWTAREDKQFEMALAKFDKDtpdRWQKIARAVG-GKSTEEVKRHYELL 56
                     58********************************.***********765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-7558IPR009057Homeodomain-like
PROSITE profilePS5129311.907661IPR017884SANT domain
SMARTSM007171.4E-11759IPR001005SANT/Myb domain
PfamPF002494.6E-10955IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-14965IPR009057Homeodomain-like
CDDcd001672.42E-61557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000014anatomyrosette leaf
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MASSSMSTSS WTAREDKQFE MALAKFDKDT PDRWQKIARA VGGKSTEEVK RHYELLLRDV  60
NDIESGRYPQ PRYRNTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-27176176RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.492791e-130flower| leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT2G18328
AtGenExpressAT2G18328
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G18328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G18328
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064391e-128AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankCP0026851e-128CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4876601e-128DQ487660.1 Arabidopsis thaliana clone 0000013653_0000009781 unknown protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077912.12e-52protein RADIALIS-like 4
SwissprotQ1G3C43e-54RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLD7LBA93e-44D7LBA9_ARALL; DNA binding protein
STRINGAT2G18328.17e-52(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Publications ? help Back to Top
  1. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  2. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  3. Baxter CE,Costa MM,Coen ES
    Diversification and co-option of RAD-like genes in the evolution of floral asymmetry.
    Plant J., 2007. 52(1): p. 105-13
    [PMID:17672842]
  4. Hamaguchi A, et al.
    A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis.
    Biosci. Biotechnol. Biochem., 2008. 72(10): p. 2687-96
    [PMID:18838801]